vntyper-online

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Upload sequencing files:

Drag & drop BAM and BAI files or click to select multiple files.

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Select reference:

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Your results will appear here after job submission.

Please cite: Saei H, et al. VNtyper enables accurate alignment-free genotyping of MUC1 coding VNTR using short-read sequencing data in autosomal dominant tubulointerstitielle nierenerkrankung. iScience. 2023 Jun 17;26(7):107171. doi: 10.1016/j.isci.2023.107171. PMID: 37456840; PMCID: PMC10338300.

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Disclaimer

Important Information
vntyper-online is intended for educational and research purposes only. It is not a substitute for professional medical advice and should not be used for clinical decision-making.

Usage Guidelines
The results provided by this tool should not be used as a basis for diagnosis or treatment without consulting a healthcare professional.

Frequently Asked Questions

What is vntyper-online?

The website vntyper-online offers online MUC1 VNTR genotyping using the vntyper algorithm. The MUC1 read data will be extracted locally on your device's browser from the BAM files you select and only this subset will be uploaded to the server for analysis

How do I upload my data?

You can upload your BAM and BAI files using the file input section on the Home page. Ensure that each BAM file has a corresponding BAI file (e.g., test.bam and test.bam.bai or test.bai).

Is my data secure?

The website https://vntyper.org/ uses SSL/HTTPS protocols with strong encryption and gets a high score for its security implementation (Mozilla Observatory A+ rating, SSL Labs A+ rating, ImmuniWeb A+ rating). Additionally, only a small fraction of the BAM file is uploaded, preserving privacy and even this read data is immediately deleted after computation. Results are kept for 7 days and then deleted from the server.

What regions can I analyze?

Select the reference assembly used for your alignment. The region corresponding to MUC1 Locus will be automatically selected.

How can I track the status of my job?

After submitting a job, the status will be displayed in the output section. You can also download the results once the job is complete.

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